# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "sicegar" in publications use:'
type: software
license:
- GPL-2.0-only
- GPL-3.0-only
title: 'sicegar: Analysis of Single-Cell Viral Growth Curves'
version: 0.3.0
doi: 10.7717/peerj.4251
identifiers:
- type: doi
  value: 10.32614/CRAN.package.sicegar
- type: url
  value: https://hardin47.github.io/sicegar/
abstract: Aims to quantify time intensity data by using sigmoidal and double sigmoidal
  curves. It fits straight lines, sigmoidal, and double sigmoidal curves on to time
  vs intensity data. Then all the fits are used to make decision on which model best
  describes the data. This method was first developed in the context of single-cell
  viral growth analysis (for details, see Caglar et al. (2018) <https://doi.org/10.7717/peerj.4251>),
  and the package name stands for "SIngle CEll Growth Analysis in R".
authors:
- family-names: Hardin
  given-names: Johanna
  email: jo.hardin@pomona.edu
  orcid: https://orcid.org/0000-0001-6251-1955
- family-names: Butler
  given-names: Samuel
  email: swbe2022@mymail.pomona.edu
- family-names: Choi
  given-names: Phineus
  email: pchm2023@mymail.pomona.edu
- family-names: Matheis
  given-names: Thomas
  email: tomp2024@mymail.pomona.edu
- family-names: Terdiman
  given-names: Mira
  email: mterdiman@berkeley.edu
- family-names: Caglar
  given-names: M. Umut
  email: umut.caglar@gmail.com
- family-names: Wilke
  given-names: Claus O.
  email: wilke@austin.utexas.edu
  orcid: https://orcid.org/0000-0002-7470-9261
preferred-citation:
  type: article
  title: 'Sicegar: R package for sigmoidal and double-sigmoidal curve fitting'
  authors:
  - family-names: Caglar
    given-names: M. Umut
    email: umut.caglar@gmail.com
  - family-names: Teufel
    given-names: Ashley I.
  - family-names: Wilke
    given-names: Claus O.
    email: wilke@austin.utexas.edu
    orcid: https://orcid.org/0000-0002-7470-9261
  year: '2018'
  journal: PeerJ
  volume: '6'
  doi: 10.7717/peerj.4251
  start: e4251
repository: https://hardin47.r-universe.dev
repository-code: https://github.com/hardin47/sicegar
commit: 4205fbe3998871dd74b08ff4565e5a79b71c6006
url: https://github.com/wilkelab/sicegar/
date-released: '2026-02-02'
contact:
- family-names: Hardin
  given-names: Johanna
  email: jo.hardin@pomona.edu
  orcid: https://orcid.org/0000-0001-6251-1955